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Bayesian fitting package

Python 55 8 Updated May 17, 2025

Mordred port in cpp

C++ 49 3 Updated Feb 27, 2025

Using data from PDBePISA with the convenience of Python and Jupyter.

Jupyter Notebook 7 1 Updated Nov 20, 2024
Python 48 2 Updated Dec 3, 2024

Bayesian Illumination is an accelerated generative model for optimization of small molecules.

Jupyter Notebook 17 1 Updated Apr 24, 2025

Tools to automatically convert and proccess cdx and cdxml files in python

Python 43 7 Updated Jun 3, 2024

bioinformatics tools running on modal

Python 3 Updated Sep 30, 2024
Python 71 7 Updated Feb 11, 2025

the world's simplest ECFP

Python 3 Updated Jun 17, 2024

Computational fluorine scanning built on OpenMM with Python.

Python 9 1 Updated Feb 6, 2023

[NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

Python 88 8 Updated Apr 28, 2024

CosolvKit is a versatile tool for cosolvent MD preparation and analysis

Python 24 7 Updated May 6, 2025

Chemistry-informed machine learning

Python 3 Updated Jun 26, 2023

Python interface for the RCSB PDB search API.

Python 63 3 Updated Mar 26, 2025

A comprehensive toolkit for predicting free energies

Python 53 9 Updated Jan 10, 2025

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

HTML 13,337 911 Updated Apr 14, 2025

OpenMM plugin to interface with XTB

C++ 16 4 Updated Feb 12, 2025
Jupyter Notebook 42 5 Updated Jan 29, 2024

A generative model for programmable protein design

Python 741 103 Updated Apr 11, 2024
Jupyter Notebook 68 9 Updated Jul 3, 2024
Python 29 4 Updated Jul 13, 2023

Converse with book - Built with GPT-3

Python 600 59 Updated Oct 1, 2024

Python-based Informatics Kit for Analysing Chemical Units

Python 71 20 Updated Jun 16, 2024

An open-source Python package for creating fast and accurate interatomic potentials.

Python 325 71 Updated May 30, 2025

Open source Java-based chemistry library

Java 98 31 Updated Jun 7, 2025

An easy-to-use Python library for processing and manipulating 3D point clouds and meshes.

C++ 1,439 115 Updated Apr 21, 2025

Adding hydrogens to molecular models

Python 41 7 Updated Nov 4, 2024

core data models of the Open Free Energy ecosystem

Python 36 10 Updated Jun 7, 2025
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