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galaxyduboule-infrastructure Public
Everything needed to maintain galaxyduboule or reinstall it from scratch.
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myNGSanalysis Public
How I analyse different NGS commandline or galaxy
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lldelisle-docker Public
Dockerfiles for containers from Lucille Delisle
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rnaseq_rscripts Public
Rscripts with config files to analyse/plot RNAseq data
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All scripts to reproduce NGS analysis in Bennabi et al. 2024 from raw data.
R GNU General Public License v3.0 UpdatedMay 5, 2025 -
toolBoxForMutantAndWTGenomes Public
Rscripts to manipulate fasta or gtf.
R GNU General Public License v3.0 UpdatedMay 5, 2025 -
ood-rstudio-baobab Public
Forked from BioinfoSupport/ood-rstudio-baobabAn Open On Demand app running Rstudio for Baobab cluster
Shell UpdatedMar 25, 2025 -
training-material Public
Forked from galaxyproject/training-materialA collection of Galaxy-related training material
HTML MIT License UpdatedFeb 17, 2025 -
usegalaxy-eu-tools Public
Forked from usegalaxy-eu/usegalaxy-eu-toolsList of tools included in https://usegalaxy.eu
Python MIT License UpdatedFeb 11, 2025 -
tools-lldelisle Public
Tool Shed repositories maintained by Lucille Lopez-Delisle
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iwc Public
Forked from galaxyproject/iwcIntergalactic Workflow Commission
Python UpdatedFeb 6, 2025 -
galaxydubouleBioblendScripts Public
Python scripts using bioblend to interact with galaxy more automatically
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This repository provides all information on how the RNA-seq was analysed in Pineau, Wong Ng, et al. 2025.
R GNU General Public License v3.0 UpdatedJan 29, 2025 -
signac Public
Forked from stuart-lab/signacR toolkit for the analysis of single-cell chromatin data
R Other UpdatedJan 17, 2025 -
galaxy-hub Public
Forked from galaxyproject/galaxy-hubGalaxy Community Hub
HTML Other UpdatedNov 17, 2024 -
tools-iuc Public
Forked from galaxyproject/tools-iucTool Shed repositories maintained by the Intergalactic Utilities Commission
HTML MIT License UpdatedNov 12, 2024 -
All scripts used to extend the gtf using Gastruloid data before BREW3R was polished and released.
Shell GNU General Public License v3.0 UpdatedOct 31, 2024 -
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All scripts necessary to build figures from raw data in Lopez-Delisle, Zakany, Bochaton et al. 2024.
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velocyto.R Public
Forked from velocyto-team/velocyto.RRNA velocity estimation in R
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BREW3R Public
Bulk RNA-seq Evidence-based Workflow for 3' UTR Reannotation
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galaxytools Public
Forked from bgruening/galaxytools🔬📚 Galaxy Tool wrappers
HTML MIT License UpdatedSep 25, 2024 -
galaxy-image-analysis Public
Forked from BMCV/galaxy-image-analysisGalaxy tools for image analysis
Python MIT License UpdatedSep 25, 2024 -
planemo Public
Forked from galaxyproject/planemoCommand-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
Python MIT License UpdatedSep 24, 2024 -
scriptsForMalkmusEtAl2024 Public
All scripts necessary to build figures from raw data in Malkmus et al. 2024.
HTML GNU General Public License v3.0 UpdatedSep 6, 2024 -
ArchR Public
Forked from GreenleafLab/ArchRArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
R MIT License UpdatedAug 16, 2024 -
gxadmin Public
Forked from galaxyproject/gxadminHandy command line utility for Galaxy administrators 🚀
Shell GNU General Public License v3.0 UpdatedJul 1, 2024
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