8000 Specify black line length is 88 characters by StellarStorm · Pull Request #120 · loli/medpy · GitHub
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Specify black line length is 88 characters #120

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Merged
merged 1 commit into from
Dec 15, 2023
Merged

Specify black line length is 88 characters #120

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1 change: 1 addition & 0 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@ repos:
rev: 23.12.0
hooks:
- id: black
args: ["--line-length=88"]

- repo: https://github.com/hadialqattan/pycln
rev: "v2.4.0"
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5 changes: 1 addition & 4 deletions doc/numpydoc/numpydoc/linkcode.py
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Expand Up @@ -41,10 +41,7 @@ def doctree_read(app, doctree):
raise LinkcodeError("Function `linkcode_resolve` is not given in conf.py")

domain_keys = dict(
py=["module", "fullname"],
c=["names"],
cpp=["names"],
js=["object", "fullname"],
py=["module", "fullname"], c=["names"], cpp=["names"], js=["object", "fullname"]
)

for objnode in doctree.traverse(addnodes.desc):
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4 changes: 2 additions & 2 deletions doc/source/conf.py
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Expand Up @@ -223,7 +223,7 @@
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
("index", "MedPy.tex", "MedPy Documentation", "Oskar Maier", "manual"),
("index", "MedPy.tex", "MedPy Documentation", "Oskar Maier", "manual")
]

# The name of an image file (relative to this directory) to place at the top of
Expand Down Expand Up @@ -271,7 +271,7 @@
"MedPy",
"One line description of project.",
"Miscellaneous",
),
)
]

# Documents to append as an appendix to all manuals.
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5 changes: 1 addition & 4 deletions tests/filter_/anisotropic_diffusion.py
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Expand Up @@ -40,8 +40,5 @@ def test_anisotropic_diffusion_voxel_spacing_array():
# Purpose of this test is to ensure the filter code does not crash
# Depending on Python versions
arr = np.random.uniform(size=(60, 31, 3))
filtered = anisotropic_diffusion(
arr,
voxelspacing=np.array([1, 1, 1.0]),
)
filtered = anisotropic_diffusion(arr, voxelspacing=np.array([1, 1, 1.0]))
assert filtered.shape == arr.shape
96 changes: 12 additions & 84 deletions tests/filter_/houghtransform.py
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10000
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Expand Up @@ -195,94 +195,22 @@ def test_template_ellipsoid(self):
# prepare
expected = [
[
[
False,
False,
False,
False,
False,
],
[
False,
True,
True,
True,
False,
],
[
False,
True,
True,
True,
False,
],
[
False,
False,
False,
False,
False,
],
[False, False, False, False, False],
[False, True, True, True, False],
[False, True, True, True, False],
[False, False, False, False, False],
],
[
[
False,
True,
True,
True,
False,
],
[
True,
True,
True,
True,
True,
],
[
True,
True,
True,
True,
True,
],
[
False,
True,
True,
True,
False,
],
[False, True, True, True, False],
[True, True, True, True, True],
[True, True, True, True, True],
[False, True, True, True, False],
],
[
[
False,
False,
False,
False,
False,
],
[
False,
True,
True,
True,
False,
],
[
False,
True,
True,
True,
False,
],
[
False,
False,
False,
False,
False,
],
[False, False, False, False, False],
[False, True, True, True, False],
[False, True, True, True, False],
[False, False, False, False, False],
],
]

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24 changes: 2 additions & 22 deletions tests/graphcut_/energy_label.py
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Expand Up @@ -42,17 +42,7 @@ class TestEnergyLabel(unittest.TestCase):

# dedicated function tests
def test_boundary_stawiaski(self):
label = [
[[1, 1], [1, 1]],
[[1, 2], [2, 2]],
[
[2, 2],
[
2,
2,
],
],
]
label = [[[1, 1], [1, 1]], [[1, 2], [2, 2]], [[2, 2], [2, 2]]]
expected_result = {(0, 1): (6, 6)}
self.__run_boundary_stawiaski_test(
label, numpy.zeros_like(label), expected_result, "3D images"
Expand Down Expand Up @@ -146,17 +136,7 @@ def test_exception_not_starting_with_index_one(self):
assert_raises(AttributeError, bt, None, label, (None, None))

def test_boundary_difference_of_means_borders(self):
label = [
[[1, 1], [1, 1]],
[[1, 2], [2, 2]],
[
[2, 2],
[
2,
2,
],
],
]
label = [[[1, 1], [1, 1]], [[1, 2], [2, 2]], [[2, 2], [2, 2]]]
expected_result = {(0, 1): (sys.float_info.min, sys.float_info.min)}
self.__run_boundary_difference_of_means_test(
label, numpy.zeros_like(label), expected_result, "3D images"
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0