Integrate DrugBAN example to PyKale -- PyTorch Version #442
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
… usage in drugban_trainer
5c2604f to
de0dc26
Compare
and test_drugban_trainer.py to pass pre-commit
jiayang-zhang
commented
Sep 17, 2024
| @@ -17,7 +17,8 @@ All data in examples are from the public domain so they will be downloaded into | |||
| - [Action recognition via domain adaptation](https://github.com/pykale/pykale/tree/master/examples/action_dann) | |||
| - [Video loading](https://github.com/pykale/pykale/tree/master/examples/video_loading) | |||
| - Bioinformatics data analysis | |||
| - [Drug-target interaction prediction](https://github.com/pykale/pykale/tree/master/examples/bindingdb_deepdta) | |||
| - [Drug-target interaction prediction (with Deepdta)](https://github.com/pykale/pykale/tree/master/examples/bindingdb_deepdta) | |||
There was a problem hiding this comment.
Change to "DeepDTA"
|
This pull request has been automatically marked as stale due to lack of activity. |
|
This pull request has been automatically marked as stale due to lack of activity. |
|
This pull request has been automatically marked as stale due to lack of activity. |
a831b42 to
6a00d3b
Compare
|
This pull request has been automatically marked as stale due to lack of activity. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
#442.
Description
Integrated Peizhen's DrugBAN to PyKale's workflow.
examplesdirectory as a starting point for using this model within PyKale.ban.pytokale.embedfor DrugBAN and BANLayer.drugban_datasets.pytokale.loaddatafor loading datasets specific to DrugBAN.drugban_trainertokale.pipeline.Discriminatorclass inkale.predict.class_domain_netsto support domain adaptation.binary_cross_entropyfunction inkale.predict.lossesfor loss calculation.Status
Ready
Types of changes
docsmanually updated for new API.