8000 matching dev and main by lauraluebbert · Pull Request #127 · pachterlab/gget · GitHub
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matching dev and main #127

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Merged
merged 3 commits into from
Apr 30, 2024
Merged

matching dev and main #127

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59d37ef
Update search.md
lauraluebbert Apr 29, 2024
4b5afc1
Update search.md
lauraluebbert Apr 29, 2024
d3e34dd
Fix link in fixture
lauraluebbert Apr 29, 2024
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4 changes: 3 additions & 1 deletion docs/src/en/search.md
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Expand Up @@ -23,7 +23,9 @@ Supported shortcuts: 'human', 'mouse'
**Optional arguments**
`-r` `--release`
Defines the Ensembl release number from which the files are fetched, e.g. 104. Default: None -> latest Ensembl release is used.
Note: *Does not apply to invertebrate species* (you can pass a specific core database (which includes a release number) to the `species` argument instead). For invertebrate species, Ensembl only stores databases from 10 releases prior to the current release.

Note: *The release argument does not apply to invertebrate species* (you can pass a specific core database (which includes a release number) to the `species` argument instead). For invertebrate species, Ensembl only stores databases from 10 releases prior to the current release.

This argument is overwritten if a specific database (which includes a release number) is passed to the species argument.

`-t` `--id_type`
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2 changes: 2 additions & 0 deletions docs/src/es/search.md
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Expand Up @@ -23,7 +23,9 @@ Accesos directos: 'human', 'mouse'
**Parámetros optionales**
`-r` `--release`
Define el número de versión de Ensembl desde el que se obtienen los archivos, p. ej. 104. Por defecto: None -> se usa la última versión de Ensembl.

Nota: *No se aplica a las especies invertebrados* (en su lugar, puede pasar una base de datos de una especies específica (incluyen un número de versión) al argumento `species`). Para especies de invertebrados, Ensembl solo almacena bases de datos de 10 versiones anteriores a la versión actual.

Este argumento se sobrescribe si se pasa una base de datos específica (que incluye un número de publicación) al argumento `species`.

`-t` `--id_type`
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2 changes: 1 addition & 1 deletion tests/fixtures/test_search.json
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Expand Up @@ -535,7 +535,7 @@
"SETDOMAIN 1",
"SETDOMAIN GROUP 1"
],
"https://useast.ensembl.org/arabidopsis_thaliana/Gene/Summary?g=AT2G23380"
"https://plants.ensembl.org/arabidopsis_thaliana/Gene/Summary?g=AT2G23380"
]
]
},
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