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the pangenome graph builder
Shell 437 45
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
C++ 213 42
implicit pangenome graph
Rust 61 6
linearize and simplify variation graphs using blocked partial order alignment
C++ 58 7
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convert variation graph alignments to coverage maps over nodes
Genotyping lots of samples with big pangenomes
use variant nesting information to flter overlapping sites from vg deconstruct output
lace up GFA files using panSN path name sub-ranges to coordinate the lacing
A toolkit for exploring regions of variation in a variation graph
bedtools getfasta / samtools faidx for pangenomes worth of FASTA files
Computational Pangenomics in Memphis
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