Stars
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Comprehensive tool for visualizing genome-wide cytosine data.
An extremely fast Python package and project manager, written in Rust.
Efficient pythonic random access to fasta subsequences
Colorblind-friendly, qualitative Okabe-Ito Scales for ggplot2 and ggraph
A simple Snakemake profile for Slurm without --cluster-config
🐳 Containerize R Markdown documents for continuous reproducibility
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
💔 An implementation of scale functions for setting axis breaks of a 'gg' plot.
Fast, efficient RNA-Seq metrics for quality control and process optimization
Assertive programming for R analysis pipelines
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
🧬 immunarch [R package] – Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Haplotype-aware CNV analysis from single-cell RNA-seq
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
aRtsy is an R package that implements algorithms for making generative art in a straightforward and standardized manner using 'ggplot2'.