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Fixed petsc header/modules
merge
minor change to test if buildbot restarted correctly
Revised ion-exchange formulation in user_manual and updated example p… …roblem.
Added e4d regression test
updated clean-tests option in makefile for regression tests.
Deprecating legacy (non-process model) version of PFLOTRAN; all chang… …esets in regression_suite_legacy pass
Updated refactored regression tests to account for bug in hydrostatic… ….F90.