8000 GitHub - propan2one/inSilicoGenome: A Python utility to create artificial genomes, this tool is designed to be used in bioinformatics benchmarking pipeline.
[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to content

A Python utility to create artificial genomes, this tool is designed to be used in bioinformatics benchmarking pipeline.

License

Notifications You must be signed in to change notification settings

propan2one/inSilicoGenome

Repository files navigation

InSilicoGenome

Python codecov Documentation Status

This project is no longer developed here and will be migrated to codeberg: https://codeberg.org/JeanDelmotte/inSilicoGenome

Installation

Using pip

$ pip install -i https://test.pypi.org/simple/ insilicogenome

Using github clone conda envs with poetry

# 1) Clone the repo 
git clone git@github.com:propan2one/inSilicoGenome.git
 
# 2) create a conda env where all tools work together
#    in my case, for ease of use, I'm going to use biopython
conda create -y -p ~/envs/insilicogenome \
    --channel conda-forge python=3.11.11 Poetry
conda activate ~/envs/insilicogenome
poetry install

Features

  • TODO

Dependencies

  • TODO

Usage

  • TODO

Documentation

The official documentation is hosted on Read the Docs: https://insilicogenome.readthedocs.io/en/latest/

Contributors

We welcome and recognize all contributions. You can see a list of current contributors in the contributors tab.

Credits

This package was created with Cookiecutter and the UBC-MDS/cookiecutter-ubc-mds project template, modified from the pyOpenSci/cookiecutter-pyopensci project template and the audreyr/cookiecutter-pypackage.

About

A Python utility to create artificial genomes, this tool is designed to be used in bioinformatics benchmarking pipeline.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

0