This is a repository for the analysis performed in the paper Eutherian Enhancers Important in Cortical Development
--transcriptome=/fast/users/newmana_c/work/10X/refdata-gex-mm10-2020-A
--sample=m_mouse
--expect-cells=10000
--jobmode=slurm
--maxjobs=100
--jobinterval=1000
--include-introns
Opossum transcriptome was generated....
Hi
--transcriptome=/fast/users/newmana_c/work/10X/Monodelphis.domestica_genome
--expect-cells=10000
--jobmode=slurm
--maxjobs=100
--jobinterval=1000
--include-introns
Integration, normalization and scaling of data output by cellranger runs was integrated using the opossum_seurat_E14_E16_E18_.Rmd script.
Cells from all samples belong to the pyramidal lineage are then subset and saved in a file 'sc_seurat.PN.sct.rds'.