8000 trouble with install {arrow} · Issue #7 · r-hub/r-minimal · GitHub
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xiaodaigh opened this issue Dec 29, 2019 · 8 comments
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trouble with install {arrow} #7

xiaodaigh opened this issue Dec 29, 2019 · 8 comments

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@xiaodaigh
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xiaodaigh commented Dec 29, 2019 •
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I have some trouble installing {arrow} which in turn is caused by {rlang}

here my the the Dockerfile

FROM rhub/r-minimal
RUN installr -d -t libparquet-dev arrow

/bin/sh: gcc: not found
make: *** [/usr/local/lib/R/etc/Makeconf:168: capture.o] Error 127
ERROR: compilation failed for package ‘rlang’
@gaborcsardi
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gaborcsardi commented Dec 29, 2019 •
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This is what I get:

~ # installr -d -t libparquet-dev arrow

--------------------------------------
Temporarily adding libparquet-dev gcc musl-dev g++
fetch http://dl-cdn.alpinelinux.org/alpine/v3.10/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/v3.10/community/x86_64/APKINDEX.tar.gz
ERROR: unsatisfiable constraints:
  libparquet-dev (missing):
    required by: world[libparquet-dev]

--------------------------------------
Removing libparquet-dev gcc musl-dev g++

--------------------------------------
Cleaning up cache
~ #

@gaborcsardi
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~ # apk search parquet
~ #

so apparently, there is no parquet in the base Alpine system.

@gaborcsardi
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Seems like you'll need to build arrow, which is not quite ideal: https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6

@xiaodaigh
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It doesn't work as jemalloc is not longer available

@xiaodaigh xiaodaigh reopened this Dec 30, 2019
@xiaodaigh
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Seems like you'll need to build arrow, which is not quite ideal: https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6

Those are instructions for Python. I will see if it works for R as well.

@xiaodaigh xiaodaigh changed the title arrow trouble with install arrow trouble with install {arrow} Dec 31, 2019
@gaborcsardi
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gaborcsardi commented Dec 31, 2019 •
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Those are instructions for Python. I will see if it works for R as well.

I meant the part that builds the arrow library:

https://gist.github.com/bskaggs/fc3c8d0d553be54e2645616236fdc8c6#file-dockerfile-L25-L42

@gaborcsardi
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I added a note to the README about this. Please comment here if you have any news about compiling arrow on ALpine.

gaborcsardi added a commit that referenced this issue Dec 12, 2023
@gaborcsardi
Add example for arrow
1ef8ed2 
Update README as well. Closes #7, really.

[ci skip]
@gaborcsardi
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quite late, but arrow works now, see the example in examples/arrow.

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