Stars
Identification of persistent local patterns in spatial omics data
single cell foundation model for Gene network inference and more
⚡ Fast scatter density plots for Matplotlib ⚡
Single Cell Pretrained Regulatory network INference from Transcripts
LIANA+: an all-in-one framework for cell-cell communication
STORIES: Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein
Python library for making 3D plots with blender
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
Scikit-learn compatible estimation of general graphical models
Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
A genome visualization python package for comparative genomics
A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
Python package to generate spatially resolved gene regulatory networks from spatial transcriptomics data.
A novel method for single-cell diagonal integration: scConfluence
This is Python source code for the multi-node2vec algorithm for fast embedding of multilayer networks
Python applications to Docker, automatically 🐳
Foundation of integer range manipulation in Bioconductor
Molecular interactions inference from single-cell multi-omics data
Single-cell multi-omics integration using Optimal Transport