Stars
Metastasis formation model and data processing code
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
C++ API & command-line toolkit for working with BAM data
🚧 Lightweight R Interface to igraph Network Analysis Library
Simulates genomes for multiple related clones in a heterogeneous tumour, along with a matched germline genome.
High performance WebGL genome visualization
Integer Linear Program for the Copy-Number Tree Problem
Software for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
microsatellite instability detection using tumor only or paired tumor-normal data