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rachadele Follow

Overview Repositories 16 Projects 0 Packages 0 Stars 4

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Rachel Schwartz rachadele

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data wrangler %>% MSc student

3 followers · 4 following

Pavlidis lab, UBC
Vancouver, CA

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Overview Repositories 16 Projects 0 Packages 0 Stars 4

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nextflow_eval_pipeline Public

Python Updated Jun 20, 2025
psychENCODE-reanalysis Public

re-analysis of psychENCODE DE with Gemma re-annotations

HTML Updated Jun 18, 2025
cell_annotation_summary.nf Public

Python Updated Jun 16, 2025
multiregression_tutorial Public

HTML Updated Jun 4, 2025
get_gemma_data.nf Public

Python Updated May 28, 2025
evaluation-data-wrangling Public

Data wrangling for test nextflow single-cell re-annotation benchmarking pipeline test datasets.

Python Updated May 12, 2025
misc_data_wrangling Public

Python Updated Jan 15, 2025
cpsc545_proj Public

Python Updated Dec 16, 2024
biof501_proj Public

Python Updated Dec 16, 2024
nf-phylo Public

nf pipeline for biof501

Updated Nov 14, 2024
download-geo-fastqs Public

Download fastqs or supplementary files from GEO and upload to hca-util bucket

bam-files geo public-data single-cell sra 10x-genomics fastq-files

Shell Updated Mar 26, 2024
extract-geo-metadata Public

extract experimental metadata from GEO xml files

rna-seq geo computational-biology microarray public-data single-cell rna-seq-analysis

Python Updated Dec 8, 2023
archaic-hominin-introgression-3d Public

all Python scripts written for undergraduate thesis at UCSC Paleogenomics lab

Python Updated Sep 1, 2023
wrangling-shortcuts Public

wrangling shortcuts

Python Updated Jul 7, 2023
rachadele Public

Config files for my GitHub profile.

config github-config

Updated Dec 9, 2022
data-visualization Public

some matplotlib stuff

Updated Jun 30, 2020

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