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R script for assessing the DNA probes made in PaintSHOP (for Drosophila melanogaster)
An efficient gene regulatory network inference algorithm for early Drosophila melanogaster embryogenesis
Visualise scRNAseq expression data of developmental Drosophila melanogaster optic lobe
Script for doi:10.1242/dev.201767, "Single-cell transcriptomics identifies new blood cell populations in Drosophila released at the onset of metamorphosis"
R scripts for the paper: Chronic dysfunction of store-operated calcium entry in fat tissue impairs organismal energy homeostasis in Drosophila
Corresponds to MacPherson, R.A. et al. "Genetic and Genomic Analyses of Drosophila melanogaster Models of Chromatin Modification Disorders"
Additional scripts for "Loss of Su(var)3-9 and SetDB1 disrupts late stages of larval development of Drosophila" article
Command line used in "Oxidative and radiation stress induce transposable elements transcription in Drosophila melanogaster" study.
Analysis for "Polycomb repressive Complex 2 and H3K27me3 threshold immune gene activation in Drosophila."
Files related to "Genome-Wide Architecture of Adaptation in Experimentally Evolved Drosophila characterized by widespread pleiotropy".
Source code for a web app to visualize expression patterns of Drosophila genes
This repository contains the code for the paper "Ranking and clustering of Drosophila olfactory receptors using mathematical morphology"
Cross-species analysis of Drosophila hemocytes
ATAC-seq analysis of Drosophila germ cells
A shiny app to visualize the expression of genes in Drosophila testes single-cell sequencing data
Analysis of Drosophila single-cell data using Sparse PCA
Source code for Liu, Y., Li, J. S. S., Rodiger, J., Comjean, A., Attrill, H., Antonazzo, G., ... & Perrimon, N. (2022). FlyPhoneDB: an integrated web-based resource for cell–cell communication pred…
Scripts for identifying housekeeping genes in Drosophila melanogaster tissues
Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy
Collections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)
R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences
Interpretable bimodal network for transcription factors binding site prediction