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Starred repositories
Community developed Quarto Extension to Embed webR for HTML Documents, RevealJS, Websites, Blogs, and Books.
Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"
A set of data-oriented wrappers around the python API of Blender.
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Plugin for folding sequences directly in PyMOL
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
Selenium/Beautiful Soup web scraper based chord parser of Ultimate-Guitar.com. Takes input file of song and artist names and returns data on each section of each song. An imperfect system that take…
Oxbow makes genomic data accessible for high-performance analytics.
Implement a ChatGPT-like LLM in PyTorch from scratch, step by step
Gen-AI Chat for Teams - Think ChatGPT if it had access to your team's unique knowledge.
Distribute and run LLMs with a single file.
Convert PDF to markdown + JSON quickly with high accuracy
freetar - an alternative frontend to ultimate-guitar.com
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
👾 Generate identicons for DNA sequences with Python
Fast, collaborative live terminal sharing over the web
Get up and running with Llama 3.3, DeepSeek-R1, Phi-4, Gemma 3, Mistral Small 3.1 and other large language models.