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v3.0.0

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Learn about vigilant mode 
Merge pull request jermp#13 from jermp/dev

Dev

v2.1.0

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Learn about vigilant mode 
Merge pull request jermp#5 from jermp/ext_mem_build

Ext mem build

v2.0.0

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general renaming to match description in papers

v1.2.0

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Learn about vigilant mode 
Merge pull request jermp#4 from jermp/abundances_dev

Permute and reverse-complement the strings to minimize the number of abundance runs

v1.1.0

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resolved conflicts

v1.0.0

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removed useless option -n
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