- Since the neur 8A7F al activity patterns showed little correlation when viewed at the same time, we investigated whether there was any correlation with neural activity shifted by time τ.
- There are 7 analysis.
- Time series neural activity plot (each cell)
- Correlogram (each cell, each c.elegans)
- Time series dimensionality reduction and clustering (each c.elegans)
- Spectrogram (each cell)
- Time-delay embedding (each cell)
- Eigenvalue distribution of the history matrix of all cells (each c.elegans)
- Recurrence plot (each cell)
git clone https://github.com/rikenbit/WormTimeSeries/
cd WormTimeSeries
snakemake -j 1- Snakemake (5.32.0 or higher)
Copyright (c) 2020 Kentaro Yamamoto and RIKEN Bioinformatics Research Unit Released under the Artistic License 2.0.
- Kentaro Yamamoto
- Koki Tsuyuzaki
- Itoshi Nikaido