Stars
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
A pipeline used to identify different modes of duplicated gene pairs
Open source code for AlphaFold 2.
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene…
EasyCodeML: A visual tool for analysis of selection using CodeML
Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels
TransposonUltimate - a holistic set of tools for transposon identification
A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easier for people to install and run these softwares.
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…
A curated list of awesome Bioinformatics libraries and software.