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Production-ready platform for agentic workflow development.

TypeScript 105,582 15,950 Updated Jul 3, 2025

The all-in-one Desktop & Docker AI application with built-in RAG, AI agents, No-code agent builder, MCP compatibility, and more.

JavaScript 46,001 4,602 Updated Jul 3, 2025

An innovative application designed to help pharmacists and pharmacy students quickly research FDA-approved drugs by retrieving relevant information from drug labels and adverse event datasets, and …

Jupyter Notebook 17 5 Updated Mar 24, 2025

python tools to make html report

Python 3 Updated Aug 11, 2023

BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Tasks

Python 664 78 Updated Oct 25, 2024

🦜🔗 Build context-aware reasoning applications

Jupyter Notebook 110,639 17,995 Updated Jul 2, 2025

oxView: Visualization and editing tool for DNA/RNA nanotechnology and oxDNA/oxRNA configuration analysis

JavaScript 54 19 Updated Jun 25, 2025

AppAgent: Multimodal Agents as Smartphone Users, an LLM-based multimodal agent framework designed to operate smartphone apps.

Python 5,918 658 Updated Mar 19, 2025

Setup AI2Apps at local system so you can use your own OpenAI key or make more back-end features.

JavaScript 424 82 Updated Jun 21, 2025

Mobile ALOHA: Learning Bimanual Mobile Manipulation with Low-Cost Whole-Body Teleoperation

Jupyter Notebook 4,166 709 Updated Jun 22, 2024

A programming framework for agentic AI 🤖 PyPi: autogen-agentchat Discord: https://aka.ms/autogen-discord Office Hour: https://aka.ms/autogen-officehour

Python 46,808 7,116 Updated Jul 3, 2025

Inference code for Llama models

Python 58,452 9,783 Updated Jan 26, 2025

Convolutional nets which can take molecular graphs of arbitrary size as input.

TeX 496 160 Updated Jan 23, 2018
Python 66 10 Updated Feb 25, 2025

A repository for setting up a RNAseq workflow

R 433 184 Updated Apr 10, 2017

MindSpore is a new open source deep learning training/inference framework that could be used for mobile, edge and cloud scenarios.

C++ 4,546 740 Updated Jul 29, 2024

GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures

Python 60 9 Updated Aug 3, 2024

Supporting code for uncultivated gut virus manuscript

Python 72 19 Updated Jul 17, 2023

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

Python 18 3 Updated Jul 1, 2025

insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene express…

Python 25 21 Updated Mar 1, 2017

Structural variant caller for real-time long-read sequencing data

Python 56 6 Updated Dec 1, 2022

A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data

Perl 12 6 Updated Apr 25, 2023

Detecting foreign inserted DNA segments in the genome

Python 9 Updated Nov 30, 2021

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

Nextflow 60 11 Updated Sep 9, 2024

A fast tool for hybrid genome assembly of long and short reads

C++ 78 9 Updated Apr 22, 2020

Working pipeline for nanopore + illumina data

Shell 10 6 Updated Oct 21, 2021

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

C 1,627 563 Updated Mar 22, 2025

A versatile pairwise aligner for genomic and spliced nucleotide sequences

C 1,991 438 Updated Jun 15, 2025

predicting expression effects of human genome variants ab initio from sequence

Python 128 41 Updated Jan 28, 2025

xHLA: Fast and accurate HLA typing from short read sequence data

Jupyter Notebook 112 56 Updated Oct 13, 2023
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