8000 rpique (Roger Pique-Regi) / Starred · GitHub
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Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Jupyter Notebook 490 76 Updated Jan 5, 2024

Low Coverage Calling of Genotypes

C++ 152 31 Updated Feb 13, 2025

RStudio Server app for Open OnDemand

Shell 6 11 Updated Feb 22, 2024

"Deep Generative Modeling": Introductory Examples

Jupyter Notebook 1,194 191 Updated Sep 22, 2024

🍄 But our princess is in another castle!

R 21 1 Updated Dec 10, 2021

Uniform Manifold Approximation and Projection - R package

R 133 16 Updated Apr 29, 2024

The Leek group guide to data sharing

6,615 243,625 Updated Aug 7, 2024

Unix, R and python tools for genomics and data science

Shell 1,287 359 Updated Mar 17, 2025

Sequential regulatory activity predictions with deep convolutional neural networks.

Python 437 129 Updated May 16, 2025

A comprehensive tutorial about GWAS and PRS

911 336 Updated Apr 1, 2023

Private, Modular, Publicly-Available Genome Interpretation Engine

JavaScript 20 6 Updated Aug 3, 2016

Clustering scRNAseq by genotypes

Python 185 48 Updated Nov 15, 2024

ARCHIVED! This plugin is officially a part of OBS as of version 26.1. See note below for info on upgrading. 🎉🎉🎉Creates a virtual webcam device from the output of OBS. Especially useful for streamin…

Objective-C++ 4,056 160 Updated Dec 14, 2020

An R package for multivariate adaptive shrinkage.

R 92 20 Updated Nov 7, 2024

Single-cell Transcriptome and Regulome Analysis Pipeline

C 285 77 Updated Mar 6, 2023

Basic R Input Output

R 57 8 Updated Apr 29, 2025

Supervised Adversarial Alignment of Single-Cell RNA-seq Data

Jupyter Notebook 30 3 Updated Feb 6, 2020

A very fast interval tree data structure

Rust 123 9 Updated Feb 3, 2025

RFMIX - Local Ancestry and Admixture Inference Version 2

C++ 88 26 Updated Dec 12, 2022

Benchmarking programming languages/implementations for common tasks in Bioinformatics

C 185 27 Updated Dec 9, 2021

A toolkit for QC and visualization of ATAC-seq results.

C++ 70 10 Updated Jan 8, 2025

python module to plot beautiful and highly customizable genome browser tracks

Python 820 121 Updated Jul 10, 2024

Vibrosight open-source project

Java 37 3 Updated Sep 27, 2019
Java 17 4 Updated Jun 23, 2020

The Composer of ggplots

R 2,550 165 Updated Jun 22, 2025

Public Available Code and Data to Reproduce Analyses in "Air pollution and COVID-19 mortality in the United States: Strengths and limitations of an ecological regression analysis."

R 105 56 Updated Nov 11, 2023

A repository of data on coronavirus cases and deaths in the U.S.

6,993 3,443 Updated Apr 2, 2024
Jupyter Notebook 61 8 Updated Jun 17, 2021
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