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List of genome assembly tools

Python 62 8 Updated May 1, 2025

Curated resources about Data Visualization, Drawing & Publishing in R

R 376 65 Updated Jul 6, 2022

Estimating recombination maps from gamete Hi-C data

C++ 3 Updated May 20, 2025

An efficient CLI to extract sequences from the SRA

Rust 97 6 Updated May 9, 2025

FULL v0, Cursor, Manus, Same.dev, Lovable, Devin, Replit Agent, Windsurf Agent, VSCode Agent, Dia Browser & Trae AI (And other Open Sourced) System Prompts, Tools & AI Models.

50,157 15,402 Updated May 21, 2025

A repository for collecting GPU basecalling stats

23 2 Updated May 9, 2025

This repository contain most updated shape file (.shp) of India country boundary and Indian State and UT boundary. The India Boundary Shape File represents the boundary of the Republic of India as …

57 36 Updated Sep 8, 2022

Public Spatial Data from Karnataka Geographic Information System - ಕರ್ನಾಟಕ ಭೌಗೋಳಿಕ ಮಾಹಿತಿ ವ್ಯವಸ್ಥೆ

Jupyter Notebook 3 Updated Feb 18, 2021
Rust 3 Updated Apr 22, 2025

This is an archive version of old RepBase library (v20170127) for RepeatMasker.

34 19 Updated May 2, 2021

Talk to the NCBI EUtils

R 22 6 Updated Oct 8, 2020

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

Rust 150 11 Updated Apr 2, 2025

Evaluating genome assemblies

C 91 9 Updated Mar 9, 2025

Recombination Landscape Estimation using Recurrent Neural Networks

Python 58 11 Updated Apr 2, 2025
Python 1 Updated Aug 4, 2022

Topology weighting by iterative sampling of sub-trees

Python 78 18 Updated Jan 5, 2025
Nextflow 2 Updated Dec 10, 2024

R scripts to sample genome at random

R 3 Updated Sep 10, 2014

Scripts for analysis used during the course

R 91 64 Updated Apr 30, 2024

TELOmere SEARCH in Long sequencing Reads

Python 8 Updated Nov 6, 2024

Fast inference of fine-scale recombination rates based on fused-LASSO

Python 50 6 Updated Apr 4, 2025

a California-inspired package of color palettes

R 107 9 Updated May 25, 2023
Python 2 Updated Mar 3, 2025

Primary analysis pipeline for ultra-accurate sequencing data

Python 2 2 Updated Feb 16, 2022

Pipeline and scripts for downstream analysis on somatic mutation data obtained with Circleseq

Python 2 1 Updated Jul 21, 2022

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

Python 77 33 Updated May 15, 2025

Pipeline to calculate de novo mutation rates from parent-offspring trios

Ruby 5 1 Updated Jan 23, 2025

30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…

Python 46,405 8,862 Updated Mar 19, 2025

Shiny gadget for labeling points on ggplot

R 186 19 Updated Mar 12, 2021
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