Convenience functions for microbiome data pre-processing. Specifically suited for analyses of data usually done at Dr. Uhlik's Laboratory of Microbial Ecology, UCT Prague.
The functions are located here: cleanSeqTools.R You can load them directly to you R session using:
devtools::source_url("https://raw.githubusercontent.com/strejcem/cleanSeqTools/master/R/cleanSeqTools.R")
16S rRNA amplicon analysis, from reads to clean data: Jachymov hotsprings
script for cutting off ITS primers: cutITSprimers.R (linux, doesn't work on Windows)