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Visualisation of Simulated Interactions between Membranes and Proteins

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VisSIMP

Visualization of Simulated Interactions between Membranes and Proteins

###Made by Mostafa Mohammed, Taylor Rydahl, and Patrick Sullivan ###In collaboration with Dr. Anne Brown

Created using Processing

** TODO: Link to final paper (included PDF in repository **

** TODO: tutorial and features of VisSIMP **

Keyboard Shortcuts / Controls:

  • O : select input file (.xvg)
    • : decrease number of bins for residue position
    • or = : increase number of bins for residue position
  • P : save current view as 'VisSIMP.png' in
  • Q or ESC : exit VisSIMP
  • D : output input data to console.
  • M : load a new membrane image file.

Input

Input is a .xvg file. First column is residue number; second column is distance of residue. Residues can be in any order currently, future work will use the input. Columns can be seperated by tab or space. See example:

10	4.1977377
10	4.2050018
10	4.2441521
9	3.7263627
9	3.7584167
9	3.7914901
9	3.7103024

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