Stars
Inference and numerics for multi-hybrid AI model architectures
A bunch of lints to catch common mistakes and improve your Rust code. Book: https://doc.rust-lang.org/clippy/
Docker container for bioinformatics tools and pipelines
Code and tutorials to visualise your data that is both beautiful *and* statistically valid
PhyloAcc a software to detect the changes of conservation of a genomic region
Super small biological datasets for unit testing
A phenotype-based tool for variant prioritization in WES and WGS data
scMatch: a single-cell gene expression profile annotation tool using reference datasets
A protocol for visualizing sequence homology among multiple chromosomal regions
Ray is an AI compute engine. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.
suimye / enhancers
Forked from anderssonrobin/enhancersLocalization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A basic user tool to execute simple docker containers in batch or interactive systems without root privileges.
This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflo…
A trackHub configurator with directory structure projection.
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Tool for identifying transposon insertions and their effects from RNA-seq data.
Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
Code for the Make Your Own Neural Network book
Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
Data and analysis for NA12878 genome on nanopore
Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.