8000 szilvajuhos (Szilveszter Juhos) / Starred · GitHub
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Python 295 35 Updated Apr 10, 2025

Music streaming server on a Android Galaxy S7

Shell 80 1 Updated Dec 29, 2024

fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…

C 363 68 Updated Sep 9, 2024

Respository for Open-Science modular microscope system.

Jupyter Notebook 499 71 Updated May 22, 2025

Count HLA alleles in single-cell RNA-seq data

TeX 60 12 Updated Nov 5, 2021

Fast and accurate in silico inference of HLA genotypes from RNA-seq

Python 138 56 Updated Aug 20, 2024

A virome-wide clonal integration analysis platform for discovering cancer viral etiologies

7 1 Updated Feb 27, 2019

Hypergraph Algorithms Package

Python 98 23 Updated Jul 6, 2023

Fast & accurate alignment of barcoded short-reads

C++ 33 7 Updated Jun 29, 2023

Microassembly based somatic variant caller for NGS data

C 155 35 Updated Jun 23, 2022

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java 269 72 Updated May 21, 2025
TypeScript 15 6 Updated Jul 11, 2025

Kourami: Graph-guided assembly for HLA alleles

Java 39 13 Updated May 21, 2019

Manipulation of SQLite-based annotations in Bioconductor

R 9 10 Updated Apr 16, 2025

Content for the OSCA Book.

Dockerfile 66 35 Updated Mar 15, 2023

Source code for 'Advanced Object-Oriented Programming in R' by Thomas Mailund

R 10 4 Updated Jun 20, 2017

handy snippets of various scripts

Shell 39 16 Updated Feb 12, 2025

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Python 48 15 Updated Jul 17, 2025

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

Java 161 42 Updated May 16, 2025

Simple script to batch upload submissions to @zenodo

Python 12 11 Updated Aug 20, 2019

for visual evaluation of read support for structural variation

Python 54 13 Updated Jun 4, 2024

QDNAseq package for Bioconductor

R 50 29 Updated Jul 27, 2024
Shell 1 3 Updated Mar 15, 2017

Precision HLA typing from next-generation sequencing data

Nextflow 3 Updated Sep 25, 2018

Fast and accurate gene fusion detection from RNA-Seq data

C++ 244 54 Updated Mar 26, 2025

annotate a VCF with other VCFs/BEDs/tabixed files

Go 379 56 Updated Jul 1, 2025

These are the scripts and pipelines for calling KIR genotypes from NGS data; they form the components of PING (Pushing Immunogenetics to the Next Generation)

3 Updated Aug 8, 2018

RNA pipeline for fusion detection

Groovy 4 3 Updated Oct 5, 2018

fast, pure-python interval overlap testing

Python 52 4 Updated Oct 2, 2020

a tool for processing .bed and .vcf files

C++ 21 11 Updated Apr 25, 2017
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