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Starred repositories
Evaluation framework for oncology foundation models (FMs)
Midnight - Pathology foundation models trained on orders of magnitude fewer WSIs
Embed social media posts in your Quarto documents.
A real-time always-on-top “replica” of a window of your choice (on Windows).
QuPath - Bioimage analysis & digital pathology
MONAI Label is an intelligent open source image labeling and learning tool.
A python package to quantitate liver histopathology in whole slide images.
A Quantum Neural Network built with Tensorflow Quantum and training on Breast Histopathology Images on Kaggle by Paul Mooney (Invasive Ductal Carcinoma)
Realtime prostate cancer segmentation demo
Digital Analysis tools for Neuroblastoma Models
A standardized benchmark for evaluating QuPath performance
A Python package for loading whole slide images and reading tiles.
Python package for reading DICOM WSI file sets.
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
This repository contains all code to support the paper: "Artificial Intelligence-Based Triaging of Cutaneous Melanocytic Lesions".
A graphical user interface for selecting whole slide images in Python using PyQt5.
Replace 'hub' with 'ingest' in any github url to get a prompt-friendly extract of a codebase
Color Deconvolution for quantification of histological staining
Data and code behind the articles and graphics at FiveThirtyEight
SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face 🤗.