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A script to organize music files based on their genres using ID3 tags and FFmpeg.

PowerShell 1 Updated Dec 27, 2024

Copy number variant detection from targeted DNA sequencing

Python 579 171 Updated Apr 1, 2025

Mixxx is Free DJ software that gives you everything you need to perform live mixes.

C++ 7 Updated Mar 6, 2025

Accurate and rapid RiboRNA sequences Detector based on deep learning

Python 111 16 Updated Jan 10, 2024

Tumor Mutational Burden

Python 58 17 Updated Aug 29, 2024

a string to graph aligner

C++ 41 10 Updated Jul 5, 2016

Tmux plugin for copying to system clipboard. Works on OSX, Linux and Cygwin.

Shell 2,854 125 Updated Mar 24, 2024

basic tmux settings everyone can agree on

Shell 1,933 94 Updated Apr 16, 2024

Continuous saving of tmux environment. Automatic restore when tmux is started. Automatic tmux start when computer is turned on.

Shell 3,515 163 Updated Aug 2, 2024

Persists tmux environment across system restarts.

Shell 11,833 449 Updated Aug 13, 2024

Tmux Plugin Manager

Shell 13,107 451 Updated Aug 5, 2024

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Rust 32 3 Updated Dec 13, 2024

๐Ÿงฎ ๐Ÿ”ข Generate multi-sample k-mer count matrix from WGS

Perl 12 3 Updated Mar 5, 2020

Make coverage plots from bam files!

Python 12 2 Updated Mar 19, 2025

Per-base per-nucleotide depth analysis

Rust 128 17 Updated Jan 16, 2025

๐Ÿ” coverage extraction from BAM/CRAM files, supporting targets ๐Ÿ“Š ย 

Nim 63 6 Updated Sep 29, 2022

Programs that push me to understand the python programming language.

Python 4 Updated Jul 27, 2018
Python 145 56 Updated May 23, 2025
Python 47 24 Updated Apr 30, 2025

Python and C++ code for reading and writing genomics data.

C++ 789 124 Updated Dec 9, 2021

Python library to simulate evolutionary sequence data

Python 78 24 Updated Dec 16, 2021

Various (mostly bioinformatic) utility scripts

Python 2 Updated Jun 28, 2019

Quickly search, compare, and analyze genomic and metagenomic data sets.

Python 506 84 Updated May 23, 2025

๐ŸŒˆ Interactive analysis of metagenomics data

R 418 79 Updated Sep 17, 2024

The complete sequence of a human genome

960 100 Updated Nov 19, 2024

Fast and accurate coordinate conversion between assemblies

C++ 112 17 Updated Mar 26, 2025

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

C++ 130 33 Updated Jun 21, 2024

Free open-source tool to extract counts of spliced EGFR vIII / EGFR non-vIII (wt) reads

Python 1 1 Updated Apr 24, 2024

Fast and accurate gene fusion detection from RNA-Seq data 3B39

C++ 240 53 Updated Mar 26, 2025

๐Ÿ“š Collaborative cheatsheets for console commands

Markdown 55,445 4,476 Updated May 25, 2025
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