The main goal of SimNIBS is to calculate electric fields caused by Transcranial Electrical Stimulation (TES) and Transcranial Magnetic Stimulation (TMS).
The pipeline is divided in three parts:
- Automatic segmentation of MRI images and meshing to create individualized head models
- Calculation of electric fields through the Finite Element Method (FEM)
- Post-processing of results for further analysis.
| Linux | Windows | MacOS |
|---|---|---|
SimNIBS runs on 64bit Windows, Linux and MacOS machines. Please visit the SimNIBS website for instructions on how to download and install SimNIBS.
After cloning the repository:
conda env create -f environment_.yml -n <name_of_my_environment>
conda activate <name_of_my_environment>
python -m pip install --editable .
python simnibs/cli/link_external_progs.py
Please see the SimNIBS website for a complete list of contributors.
We have included code or binaries from the following project to this repository:
- Gmsh
- meshfix
- CAT12
- PETSc
- HYPRE
- MPICH
- MSMPI
- CYGWIN
- pygpc
- PyPardiso
- PyPardiso
- PyPardiso
- CGAL
- Mmg
- FMM3D
For a full list of files and licenses, please see the 3RD-PARTY.md file