10000 sebrauschert (Seb Rauschert) / Starred · GitHub
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Starred repositories

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R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)

R 28 3 Updated May 21, 2025

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Perl 495 157 Updated Jul 11, 2025
Python 50 3 Updated Jul 8, 2025

Data Science Operations (dso) command line tool

Python 41 2 Updated Apr 29, 2025

Making Protein folding accessible to all!

Jupyter Notebook 2,316 594 Updated Jul 3, 2025

An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

R 88 24 Updated Jan 23, 2024

A curated collection of Nextflow implementation patterns

Nextflow 363 73 Updated Nov 21, 2023

Run your GitHub Actions locally 🚀

Go 64,432 1,682 Updated Jul 1, 2025

This is the playbook for "code-with" customer or partner engagements

Dockerfile 2,452 632 Updated Jun 3, 2025

Full-stack framework for building Multi-Agent Systems with memory, knowledge and reasoning.

Python 29,870 3,798 Updated Jul 14, 2025

A Shiny Application to Host, Filter, Aggregate and Download Data in Various Formats

R 16 9 Updated Jul 26, 2021

Call LLM APIs from R

R 481 86 Updated Jul 12, 2025

AIHawk aims to easy job hunt process by automating the job application process. Utilizing artificial intelligence, it enables users to apply for multiple jobs in a tailored way.

Python 28,442 4,297 Updated May 28, 2025

Reproducible Data Science environments for R with Nix

R 293 20 Updated Jul 7, 2025

https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2

Python 29 3 Updated Jan 22, 2025

A simple, intuitive toolkit for quickly implementing LLM powered applications.

Python 258 35 Updated Jan 5, 2025

🦉 Data Versioning and ML Experiments

Python 14,656 1,233 Updated Jul 11, 2025

ETL, Analytics, Versioning for Unstructured Data

Python 2,606 117 Updated Jul 14, 2025

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

R 430 73 Updated Jul 2, 2025

Cell clustering and communication network inference for single-cell transcriptomics

R 14 Updated Sep 18, 2024

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

Python 40,990 15,311 Updated Jul 14, 2025

Personal diploid genome creation and coordinate conversion

Python 30 10 Updated Apr 1, 2025

An extremely fast Python package and project manager, written in Rust.

Rust 61,313 1,758 Updated Jul 14, 2025

Retrieve and summarize bioRxiv preprints with a local LLM using ollama

R 69 10 Updated Sep 27, 2024

The Self-hosted AI Starter Kit is an open-source template that quickly sets up a local AI environment. Curated by n8n, it provides essential tools for creating secure, self-hosted AI workflows.

10,522 2,518 Updated Jun 30, 2025

Easy scrollytelling in Quarto

JavaScript 191 8 Updated Jul 12, 2025

using all the bits for echt rapid variant annotation and filtering

Rust 153 10 Updated Mar 21, 2025

Streamline Coding & Speed Up Dev Process. Your Own Personal Senior Engineer For Free!

Shell 133 17 Updated Mar 27, 2024

🚀 Retrieval Augmented Generation (RAG) with txtai. Combine search and LLMs to find insights with your own data.

Python 385 36 Updated May 6, 2025

Password protect a static HTML page, decrypted in-browser in JS with no dependency. No server logic needed.

HTML 7,422 459 Updated Jun 7, 2025
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