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Starred repositories
Pipe Viewer - monitor the progress of data through a pipe. mirror of https://codeberg.org/a-j-wood/pv
This is the zgtools version of the EviAnn pipeline
Software for painlessly estimating average nucleotide diversity within and between populations
This is the standalone version of the EviAnn pipeline
A machine learning-based genotyping tool for structural variation in short reads
Template to quickly start a new JBrowse 2 plugin
An R script to generate plots for ADMIXTURE runs, for multiple K values.
A toolkit for automated local phylogenomic analyses, or ALPHA
Analytic/Visual Tool For Evolutionary Diversity Across Genomes. Now lives at https://github.com/chilleo/ALPHA.
Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
Interactive interface for pophelper using shiny web framework.
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
PopCluster: a new algorithm to identify genetic variants with ethnicity-dependent effects
millanek / tutorials
Forked from mmatschiner/tutorialsTutorials on phylogenetic and phylogenomic inference
Simple heuristic approach for correcting phasing errors
A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.
FocalSV: target region-based structural variant assembly and refinement using single-molecule long read sequencing data