Pediatric IBD (late and early onset) vs healthy
- Manifest: /mnt/isilon/microbiome/perry/ibd-gwas/data/processed/MANIFEST.csv
- Results
- Methods
- Log
- Meetings
- Can adult IBD associatons be used for a pediatric polygenic risk score?
- Does grouping adult IBD associatons by pathway improve pediatric polygenic risk score?
conda create env create -f envs/project.yml
snakemake -s Snakefile.py --use-singularity --singularity-args "-B /mnt/isilon/:/mnt/isilon" --use-conda -j22 before_imputation
impute with https://imputationserver.sph.umich.edu/index.html w/ data/iterim/eur_vcf/*vcf.gz and download imputed files to data/interim/imputed/
snakemake -s Snakefile.py --use-singularity --singularity-args "-B /mnt/isilon/:/mnt/isilon" --use-conda -j22 after_imputation