shlienlab
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WGS_somatic_pipeline
WGS_somatic_pipeline PublicA WDL workflow and wrapper for executing tumour + normal alignment, somatic small variant discovery, somatic structural variant and somatic copy number alteration discovery.
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cosmic.cancer.gene.census
cosmic.cancer.gene.census PublicA R package with common functions for annotating and filtering mutation data using the COSMIC cancer gene census
Repositories
- pre-otter Public
RNA-seq pipeline to go from paired end fastq.gz files to TPM file and submit to the otter web app.
shlienlab/pre-otter’s past year of commit activity - otter-api-wrapper-python Public
Python API wrapper for using the Otter webapp: otter.ccm.sickkids.ca
shlienlab/otter-api-wrapper-python’s past year of commit activity - WGS_somatic_pipeline Public
A WDL workflow and wrapper for executing tumour + normal alignment, somatic small variant discovery, somatic structural variant and somatic copy number alteration discovery.
shlienlab/WGS_somatic_pipeline’s past year of commit activity - SVetect Public
A tool for identifying and classifying structural rearrangements and chromoplexy from high throughput sequencing data.
shlienlab/SVetect’s past year of commit activity - ShlienLab.Core.Filter Public
A R package for filtering somatic mutation data used in the standard production pipeline in the Shlien Lab
shlienlab/ShlienLab.Core.Filter’s past year of commit activity
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