8000 sinaghadermarzi (Sina Ghadermarzi) / Starred · GitHub
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Starred repositories

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TCR and BCR assembly from RNA-seq data

C 310 54 Updated Apr 30, 2025

Examples and guides for using the OpenAI API

MDX 64,382 10,560 Updated May 31, 2025

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

Python 96 30 Updated Aug 14, 2022

Fast and Versatile Alignments for Python

C++ 49 6 Updated Jun 8, 2023

Papers about pretraining and self-supervised learning on Graph Neural Networks (GNN).

Python 1,678 161 Updated Feb 2, 2024

Listing of papers about machine learning for proteins.

1,621 215 Updated May 31, 2024

A collection of 1000+ survey papers on Natural Language Processing (NLP) and Machine Learning (ML).

2,022 244 Updated Mar 31, 2024

AlphaFold2 non-docker setup

Shell 357 122 Updated Nov 24, 2023

higher is a pytorch library allowing users to obtain higher order gradients over losses spanning training loops rather than individual training steps.

Python 1,619 127 Updated Mar 25, 2022

Graph Neural PDEs

Jupyter Notebook 332 57 Updated Oct 20, 2022

Parallel computing with task scheduling

Python 13,244 1,766 Updated May 20, 2025

Tesseract Open Source OCR Engine (main repository)

C++ 67,183 9,919 Updated May 25, 2025

Open source code for AlphaFold 2.

Python 13,552 2,405 Updated Mar 18, 2025

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Python 32,417 3,044 Updated Jun 1, 2025

Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

Jupyter Notebook 1,097 195 Updated Apr 18, 2025

resources for faculty

217 28 Updated Jan 8, 2023

High-quality implementations of standard and SOTA methods on a variety of tasks.

Python 1,511 211 Updated Apr 29, 2025

📋 Survey papers summarizing advances in deep learning, NLP, CV, graphs, reinforcement learning, recommendations, graphs, etc.

2,852 291 Updated Mar 17, 2023

A curated list of Machine Learning Surveys, Tutorials and Books.

JavaScript 1,380 200 Updated Jan 3, 2023
Jupyter Notebook 531 104 Updated Apr 3, 2025

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Jupyter Notebook 1,040 288 Updated Jun 10, 2024

Rain is a simple and clean Jekyll theme with focus on content.

CSS 44 60 Updated Jul 4, 2024

An Open-Source Package for Network Embedding (NE)

Python 1,700 485 Updated Jan 10, 2024
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