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pyprophet Public
Forked from PyProphet/pyprophetPyProphet: Semi-supervised learning and scoring of OpenSWATH results.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 18, 2025 -
redeem Public
Repository for Deep Learning Models for Mass Spectrometry written in Rust
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report-builder Public
A simple html report builder for results content, tables and plots.
Rust UpdatedMay 10, 2025 -
easypqp Public
Forked from grosenberger/easypqpEasyPQP: Simple library generation for OpenSWATH
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 6, 2025 -
sage Public
Forked from lazear/sageProteomics search & quantification so fast that it feels like magic
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pyopenms_viz Public
Forked from OpenMS/pyopenms_vizJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 5, 2025 -
arycal Public
ARYCAL: across run DIA-MS extracted ion chromatogram alignment written in Rust
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OpenMS Public
Forked from OpenMS/OpenMSThe codebase of the OpenMS project
C++ Other UpdatedApr 1, 2025 -
rust-xgboost Public
Forked from davechallis/rust-xgboostRust bindings for XGBoost.
Rust MIT License UpdatedMar 24, 2025 -
massdash Public
Forked from Roestlab/massdashMassDash: Streamlined DIA-MS visualization, analysis, optimization, and prototyping
HTML BSD 3-Clause "New" or "Revised" License UpdatedMar 21, 2025 -
gbdt-rs Public
Forked from mesalock-linux/gbdt-rsMesaTEE GBDT-RS : a fast and secure GBDT library, supporting TEEs such as Intel SGX and ARM TrustZone
Rust Apache License 2.0 UpdatedMar 20, 2025 -
diffusion-deconvolution-dia-msms Public
Forked from Roestlab/diffusion-deconvolution-dia-msms-dataApply diffusion models to deconvolute highly multiplexed DIA-MS/MS data by conditioning on MS1 signals to generate cleaner MS2 data for downstream analysis.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMar 12, 2025 -
psm_utils Public
Forked from CompOmics/psm_utilsCommon utilities for parsing and handling peptide-spectrum matches and search engine results in Python
Python Apache License 2.0 UpdatedMar 6, 2025 -
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StreamSage Public
StreamSage is a web application for performing proteomics database searching use Sage.
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streamlit-deployment Public
Forked from OpenMS/streamlit-deploymentStreamlit deployment with Docker
UpdatedDec 29, 2024 -
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timsquery Public
Forked from TalusBio/timsqueryGeneral tools to extract chromatograms from timsTOF data
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candle Public
Forked from huggingface/candleMinimalist ML framework for Rust
Rust Apache License 2.0 UpdatedDec 4, 2024 -
documentation Public
Forked from OpenSWATH/documentationThis repository contains the website documentation for OpenSWATH.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 12, 2024 -
timsrust Public
Forked from MannLabs/timsrustJupyter Notebook Apache License 2.0 UpdatedJul 5, 2024 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedJan 12, 2024 -
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SherlockChromes Public
Forked from LLYX/SherlockChromesDeep Learning based Chromatographic Region of Interest Detector.
Python UpdatedSep 24, 2023 -
DIAlignR Public
Forked from shubham1637/DIAlignRThis is a R package for alignment of DIA mass-spec data
HTML UpdatedJul 17, 2023 -
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Single_Cell_Analysis_Toolkit Public
Forked from danielsnider/Single_Cell_Analysis_ToolkitA GUI for nontechnical users to perform cell segmentation, measuring, tracking, and plotting of high-content screens
MATLAB GNU General Public License v3.0 UpdatedMar 13, 2023 -
ms-numpress Public
Forked from ms-numpress/ms-numpressImplementations of compression schemes for numeric data from mass spectrometers.
C++ UpdatedNov 28, 2022 -
ABC-units Public
Forked from hyginn/ABC-unitsA Bioinformatics Course: R modules for learning units
R UpdatedOct 12, 2022
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