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gfalint: Check a GFA file for syntax errors

Graphical Fragment Assembly (GFA) is a genome sequence assembly graph file format.

See the Graphical Fragment Assembly (GFA) Format Specification.

Compile gfalint

./autogen.sh
./configure
make

Run gfalint

./gfalint examples/sample1.gfa
./gfalint examples/sample2.gfa

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Check a GFA file for syntax errors

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