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dorado Public
Forked from nanoporetech/doradoOxford Nanopore's Basecaller
C++ Other UpdatedApr 10, 2025 -
nanotail Public
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
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quarto-web Public
Forked from quarto-dev/quarto-webQuarto website
JavaScript Other UpdatedJun 19, 2024 -
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lapa Public
Forked from mortazavilab/lapaAlternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
Jupyter Notebook UpdatedAug 25, 2023 -
tailfindr Public
Forked from adnaniazi/tailfindrAn R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
R GNU General Public License v3.0 UpdatedJun 9, 2023 -
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ninetails Public
Forked from LRB-IIMCB/ninetailsAn R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
R Other UpdatedAug 23, 2022 -
dtaidistance Public
Forked from wannesm/dtaidistanceTime series distances: Dynamic Time Warping (fast DTW implementation in C)
Python Other UpdatedFeb 22, 2022 -
TALON Public
Forked from mortazavilab/TALONTechnology agnostic long read analysis pipeline for transcriptomes
Python MIT License UpdatedSep 7, 2021 -
PlasFlow Public
Software for prediction of plasmid sequences in metagenomic assemblies
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d3pendr Public
Forked from bartongroup/d3pendrDifferential 3' end analysis
Python UpdatedMay 3, 2021 -
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siscreenr Public
Forked from pbrigf-ibb/siscreenrhigh throughput screening analysis package
R GNU General Public License v3.0 UpdatedMar 18, 2020 -
ont2cram Public
Forked from EGA-archive/ont2cramOxford Nanopore HDF/Fast5 to CRAM conversion tool
Python Apache License 2.0 UpdatedDec 30, 2019 -
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nanopolish Public
Forked from jts/nanopolishSignal-level algorithms for MinION data
C++ MIT License UpdatedFeb 27, 2019 -
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flair Public
Forked from BrooksLabUCSC/flairFull-Length Alternative Isoform analysis of RNA
Python UpdatedJan 15, 2019 -
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LINE_1_RACE_seq_analysis Public
Scripts and data used during the analysis of LINE-1 RACE seq tail-seq output, for the publication "Uridilation by TUT4/7 restricts retrotransposition of human LINE-1"s (Warkocki et al 2018, Cell, a…
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hts-specs Public
Forked from samtools/hts-specsSpecifications of SAM/BAM and related high-throughput sequencing file formats
TeX UpdatedJun 29, 2018 -
poreduck Public
Forked from alexiswl/poreduckA comprehensive toolkit for running Oxford Nanopore's MinION
Python UpdatedJun 11, 2018 -
NA12878 Public
Forked from nanopore-wgs-consortium/NA12878Data and analysis for NA12878 genome on nanopore
Other UpdatedJun 10, 2018 -
minion_qc Public
Forked from roblanf/minion_qcQuality control for MinION sequencing data
R MIT License UpdatedMay 30, 2018 -
DeepLearn Public
Forked from GauravBh1010tt/DeepLearnImplementation of research papers on Deep Learning+ NLP+ CV in Python using Keras, Tensorflow and Scikit Learn.
Python MIT License UpdatedApr 16, 2018 -
raceseq_scripts Public
Various scripts for use in raceseq analysis
R GNU General Public License v3.0 UpdatedApr 12, 2018 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedFeb 1, 2018 -
Theano Public
Forked from Theano/TheanoTheano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic …
Python Other UpdatedFeb 1, 2018
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