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revision-count-7275

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Don't delete the link in remove_long_links()

Fixes mmdb crash, but function now doesn't work.

revision-count-7274

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Trivial: update FAQ (duplicate residue numbers)

revision-count-7273

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Trivial: update notes

Release-0.8.9

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Merge remote-tracking branch 'refs/remotes/origin/master'

revision-count-7246

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Release 0.8.9

revision-count-7215

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Trivial: remove debugging in previous refinement test

revision-count-7207

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Remove #f from documentation strings in the header file

revision-count-7201

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Add missing files from previous commit

revision-count-7200

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Add a fix for the align and mutate test

The results depend on the gap and space penalties.
Add markup test for info_dialog().
Rework the alignment displayed in the gui after align_and_mutate().

revision-count-7192

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std::lround is C++11 - use a cast for now
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