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Amplicon sequencing analysis workflow using DADA2 and QIIME2
This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
Metabarcoding Analysis Self-Guided Tutorial Website
An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
Cutadapt removes adapter sequences from sequencing reads
A robust and fast clustering method for amplicon-based studies
Versatile open-source tool for microbiome analysis
creating reference databases for amplicon sequencing
R package with a set of useful functions to genetic analysis.