8000 smehringer (Svenja Mehringer) / Starred · GitHub
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Getting Work Done
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Getting Work Done
  • Freie Universitaet Berlin
  • Berlin

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@seqan

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Showing results

HIBF and IBF

C++ 4 3 Updated May 24, 2025

A tool to partition a set of sequences into similar batches.

C++ 2 2 Updated Feb 23, 2021

Run compilers interactively from your web browser and interact with the assembly

TypeScript 17,542 1,874 Updated May 30, 2025

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

C++ 52 18 Updated May 24, 2025

This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the fle…

CMake 6 9 Updated May 24, 2025

The modern argument parser for c++ tools

C++ 11 7 Updated May 24, 2025

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

C++ 32 8 Updated Sep 19, 2022

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

C++ 428 83 Updated May 24, 2025

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

C++ 301 40 Updated Mar 18, 2024

Population-scale genotyping using pangenome graphs

C++ 182 21 Updated Jan 9, 2025

SeqAn's official repository.

C++ 489 171 Updated Apr 2, 2025
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