8000 GitHub - soccin/MusVar: Mouse variant pipeline based on nf-core/sarek
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Mouse Variant Pipeline

Version: 1.3.2

Pulled in updates for sarek 3.4.4-A (for real this time). Also fixed memory in MarkDups

Version 1.3.1

Code for running the nf-core/sarek pipeline with M-IMPACT

This version can handle different assays

Install

  • Remember to clone with submodules --recurse-submodules
  • Install nextflow in bin

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Mouse variant pipeline based on nf-core/sarek

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