8000 Fix msa frame transform for opaque images by melanieclarke · Pull Request #9102 · spacetelescope/jwst · GitHub
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Fix msa frame transform for opaque images #9102

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merged 2 commits into from
Jan 29, 2025

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@melanieclarke melanieclarke commented Jan 28, 2025

Working on a helpdesk ticket, I noticed a bug with NIRSpec imaging WCS transforms when the filter is OPAQUE. The detector to MSA transform works, e.g.:
img_det2msa = img_wcs.get_transform('detector', 'msa')
but fetching the inverse transform crashes:
img_msa2det = img_wcs.get_transform('msa', 'detector')

The issue is a scale factor added to the end of the WCS transform to report final wavelengths in um instead of m. The implemented scaling model overwrites the inverse transform in the gwa2msa transform, so that it expects the wrong number of input and output values.

The fix here is to apply the scaling earlier for wavelengths for terminal MSA coordinates, before the gwa2msa transform and its inverse are defined.

Test data is: jw06646012001_02101_00001_nrs1_rate.fits

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news fragment change types...
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stage 1

  • changes/<PR#>.group_scale.rst
  • changes/<PR#>.dq_init.rst
  • changes/<PR#>.emicorr.rst
  • changes/<PR#>.saturation.rst
  • changes/<PR#>.ipc.rst
  • changes/<PR#>.firstframe.rst
  • changes/<PR#>.lastframe.rst
  • changes/<PR#>.reset.rst
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  • changes/<PR#>.jump.rst
  • changes/<PR#>.clean_flicker_noise.rst
  • changes/<PR#>.ramp_fitting.rst
  • changes/<PR#>.gain_scale.rst

stage 2

  • changes/<PR#>.assign_wcs.rst
  • changes/<PR#>.badpix_selfcal.rst
  • changes/<PR#>.msaflagopen.rst
  • changes/<PR#>.nsclean.rst
  • changes/<PR#>.imprint.rst
  • changes/<PR#>.background.rst
  • changes/<PR#>.extract_2d.rst
  • changes/<PR#>.master_background.rst
  • changes/<PR#>.wavecorr.rst
  • changes/<PR#>.srctype.rst
  • changes/<PR#>.straylight.rst
  • changes/<PR#>.wfss_contam.rst
  • changes/<PR#>.flatfield.rst
  • changes/<PR#>.fringe.rst
  • changes/<PR#>.pathloss.rst
  • changes/<PR#>.barshadow.rst
  • changes/<PR#>.photom.rst
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  • changes/<PR#>.resample_spec.rst
  • changes/<PR#>.residual_fringe.rst
  • changes/<PR#>.cube_build.rst
  • changes/<PR#>.extract_1d.rst
  • changes/<PR#>.resample.rst

stage 3

  • changes/<PR#>.assign_mtwcs.rst
  • changes/<PR#>.mrs_imatch.rst
  • changes/<PR#>.tweakreg.rst
  • changes/<PR#>.skymatch.rst
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  • changes/<PR#>.outlier_detection.rst
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other

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  • changes/<PR#>.cube_skymatch.rst
  • changes/<PR#>.engdb_tools.rst
  • changes/<PR#>.guider_cds.rst

@melanieclarke melanieclarke requested a review from a team as a code owner January 28, 2025 19:09
@melanieclarke melanieclarke added this to the Build 11.3 milestone Jan 28, 2025
@melanieclarke melanieclarke requested a review from a team as a code owner January 28, 2025 19:11
@melanieclarke melanieclarke requested a review from nden January 28, 2025 19:12
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melanieclarke commented Jan 28, 2025

Regression tests here:
https://github.com/spacetelescope/RegressionTests/actions/runs/13017855596

No failures, as expected. I added a unit test to cover the change.

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codecov bot commented Jan 28, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 78.15%. Comparing base (6d513e1) to head (bd46fad).
Report is 938 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #9102      +/-   ##
==========================================
+ Coverage   77.74%   78.15%   +0.40%     
==========================================
  Files         507      505       -2     
  Lines       46570    46244     -326     
==========================================
- Hits        36207    36141      -66     
+ Misses      10363    10103     -260     
Flag Coverage Δ *Carryforward flag
nightly 77.77% <ø> (-0.02%) ⬇️ Carriedforward from cbba455

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@nden nden left a comment

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LGTM

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@tapastro tapastro left a comment

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👍

@melanieclarke melanieclarke merged commit 4f43822 into spacetelescope:main Jan 29, 2025
29 of 31 checks passed
@melanieclarke melanieclarke deleted the nrs_opaque_wcs branch January 29, 2025 18:08
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