Stars
A series of scripts to automate iterative linkage analysis using LINKDATAGEN and Merlin. See below for a more detailed explanation of this very niche linkage analysis tool.
RNA-seq prediction with deep convolutional neural networks.
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Tandem repeat genotyping and visualization from PacBio HiFi data
Tools for fast and flexible genome assembly scaffolding and improvement
A library of free open source icons for science illustrations in biology and chemistry
Create a magnified inset of part of a ggplot object
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
using all the bits for echt rapid variant annotation and filtering
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Miscellaneous scripts for applications of PacBio systems
CLI tool for flexible and fast adaptive sampling on ONT sequencers
VATK! A collection of helper scripts to annotate and sort variants