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Starred repositories
An R package for visualising cell-cell interactions
popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and detailed analysis of single cell RNA-seq data.
Coarse-graining of large single-cell RNA-seq data into metacells
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and StemID2 method including novel functionalities and performanc…
Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
scDissector is an exploratory data analysis tool for clustered single-cell RNA-seq data. The tool has been developed and implemented as R shiny app by Ephraim (Effi) Kenigsberg
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
Awesome AI Chat (ChatGPT4...) , Code (Github Copilot...), Read (ChatPDF...), Paint (Midjourney...), Write (NotionAI...), Audio (Adobe Podcast...), Video (Nova AI...), etc.
A curated list of resources for learning bioinformatics.
scINRB: single-cell gene expression imputation with network regularization and bulk RNA-seq data
Brings SingleCellExperiment objects to the tidyverse
The goal of tidytlg is to generate tables, listings, and graphs (TLG) using Tidyverse.
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
rCASC: reproducible Classification Analysis of Single Cell Sequencing Data