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22 Open 39 Closed
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Issues list

EOF block missing after haplotagging
#105 opened May 7, 2025 by robert-a-forsyth
8
Merging phased SNV and SV VCFs?
#104 opened Apr 18, 2025 by matthewglasenapp
Filter by ONT indels quality
#100 opened Mar 23, 2025 by ilivyatan
1
Haplotag command only tagging a small percentage of reads!
#97 opened Jan 14, 2025 by DHmeduni
2
High memory consumption of modcall
#94 opened Dec 12, 2024 by leonschuetz
2
Phasing somatic SNP/INDEL/SV/5mc
#92 opened Nov 28, 2024 by DayTimeMouse
4
The parameter setting in your pipeline of variant calling
#91 opened Nov 22, 2024 by Jerry-bioinformatics
3
Does longphase support SNVs from illumina/short-reads
#88 opened Sep 23, 2024 by eesiribloom
5
install with conda in v1.7.3
#87 opened Sep 20, 2024 by Jerry-bioinformatics
1
How to convert phased VCF to haplotype FASTA
#84 opened Jul 24, 2024 by FatYuanBao
2
autoreconf: error: aclocal failed with exit status: 2
#75 opened May 29, 2024 by sahuno
1
phasing short tandem repeat VCFs
#62 opened Apr 14, 2024 by ilivyatan
2
Different benchmark datasets showed great differences in LongPhase phasing SNP only.
#56 opened Mar 31, 2024 by Jerry-bioinformatics
2
Question on supplementary alignment phasing and tagging
#51 opened Feb 26, 2024 by aysegokce
11
Co-phasing consistency
#36 opened Dec 12, 2023 by ilivyatan
3
Is there an option to supply a bed file with particular regions for phasing ?
#31 opened Nov 15, 2023 by ilivyatan
4
output vcf files from phasing contain many repetitive header lines
#30 opened Nov 12, 2023 by ilivyatan
11
Phasing SVs without --report_readid
#23 opened Oct 9, 2022 by agolicz
1
empty output
#22 opened Sep 5, 2022 by ChannieJ
1
terminate called after throwing an instance of 'std::out_of_range'
#17 opened Jun 8, 2022 by MichelMoser
2
Population-scale co-phasing of SVs & SNPs
#11 opened Mar 27, 2022 by tuannguyen8390
6
Combine illumina and ONT reads in phasing
#9 opened Mar 22, 2022 by ramesh8v
1
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