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- 14 commits
- 53 files changed
- 7 contributors
Commits on Dec 19, 2024
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Allow max tracking args for Kalman filter (#1986)
* and note where `target_instance_count` is initialized * `target_instance_count` is not available in the GUI but `max_tracks` is * add note where `target_instance_count` is initialized * add note since neither `target_instance_count` nor `pre_cull_to_target` are options in the GUI * accept either max_tracks or target_instance_count for compatibility with both CLI and GUI * TypeError: track() got an unexpected keyword argument 'img_hw' since `init_tracker` has `img_hw` * useful print statements * black * np.bool is deprecated * debug * add params for testing kalman filter * remove params because this function isn't used * debugging * test kalman filter tracking * add documentation * kalman filter needs node indices, simple tracking and similarity anything besides normalized * add tests for every combination related to kalman args * add example to documentation * delete debug scripts * delete print statements * black * add test for connect single breaks
Configuration menu Copy the full SHA 66d96ceView commit details
Commits on Dec 20, 2024
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Fix input scaling in centered-instance model (#2054)
* Fix input scaling in centered-instance model * Fix topdown multi-class model * Adjust centroids * Fix scaling in centroidcrop * Fix scaling for visualizer * Add tests for centered instance with scaling * Remove paths * Remove unused files --------- Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com>
Commits on Jan 21, 2025
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Add resolution grouping to image dataset import for DLC (#2087)
* Add resolution grouping to image dataset import for DLC * Fix ordering * Add a fallback in case image files are not accessible.
Commits on Feb 13, 2025
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Fix port already in use when running inference (#2064)
* add wait * add comment for explanation * place find free port in utils * revert * add time when finding free ports * make the wait shorter * modify imports * solve error --------- Co-authored-by: Elizabeth <106755962+eberrigan@users.noreply.github.com>
Commits on Apr 7, 2025
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Ctrl + Click and Drag to copy instance (#2072)
* create new ctrl + click methods * update backend init * used commands from the context * drag works * resolve bouding box out of instance error * cleanup code * handle edge cases * fix alt click for nodes * duplicate instance when node is selected * add comment * handle edge case * add documentation to sleap.ai * minor changes according to review * modify doc * remove callback_connected * add default behavior --------- Co-authored-by: Liezl Maree <38435167+roomrys@users.noreply.github.com>
Commits on Apr 8, 2025
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Allow tracking on
Instances (by addingInstance.tracking_score) (#……1302) * Add tracking_score attribute to `Instance`s * Update adaptors to write tracking scores for `Instance`s * Set de 10000 fault `Instance.tracking_score` = 0.0 * Bump `FORMAT_ID` and read/write `Instance.tracking_score` * Prefer user instances when tracking * Add back instances that were not tracked --------- Co-authored-by: DivyaSesh <64513125+gitttt-1234@users.noreply.github.com>
Commits on Apr 9, 2025
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Extract clip as video, slp and pkg.slp (#2155)
* add extrack clip and labels menu item * Reuse ExportClipDialog * Move video writing functions to videowriter.py * Create and use ExportVideoClip base class * [wip] Add ExportLabelsSubset command failing on creating labels_subset * Revert test dialog and commands * Finish ExportLabelsSubset command * Test simple case for export labels subset * Comment todo (fails if suggestions outside of video subset) * Get subset of suggestions * Test suggestions are also pruned * Modularize ExportLabelsSubset with methods * Automatically open project when done * Do not open video when exporting labels subset * Add failing test for suggestions past upper bound * Fix logic for pruning suggestions * Use single parameterized command exportLabelsSubset for both as package and as slp * Lint * Do not use Literal need to either have python 3.8+ of pip install typing_extensions * Add back accidentally removed copy_to_clipboard --------- Co-authored-by: Eric Leonardis <leonardiseric@gmail.com>
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Enhance progress reporting in inference (#2156)
* Enhance progress reporting in inference with elapsed time and MofN complete columns; add tracker final pass status messages * Improve final pass tracking with elapsed time reporting and enhance prediction queue handling to manage timeouts * Add some highly duplicated debugging logging and timeout logic * Fix inference dialog re-opening when no skeleton is present * Lint
Commits on Apr 15, 2025
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Remove
TrainingJobConfiguse inLossViewer(#2162)* Add failing test to show that we aren't doing what we think attr.ib only works on class intialization, not defaults for methods * Directly take plateau information as input * Update tests
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Remove CLI for "mostly depreciated" trackcleaner (#2161)
* Remove CLI for "mostly depreciated" trackcleaner * Do not make changes where we did not intend to
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Add
Pipeline.from_datamethod (#2160)* Replace Video and Labels to_pipeline with Pipeline.from_data method tests not updated yet * Update test to use Pipeline.from_data * Do not support user_labeled_only=False in Pipeline.from_data
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Remove
VisualPredictorclass (#2167)* Remove broken VisualPredictor class and all references * Remove unused DataOverlay and ModelData classes * Remove unused PafOverlay class
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Move select
sleap.nn.vizfunctions tosleap.utils(#2168)* Remove unused LabeledFrame.plot_predicted * Add LabeledFrame plotting code to sleap.util * Add other non-nn plotting code to util * Remove non-nn-specific plotting code from nn.viz * Update imports * Better error message * Fix problems with destructuring
Commits on May 20, 2025
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* Pin miniforge version * Change rich version in pypi requirements --------- Co-authored-by: gitttt-1234 <divyasesh@Mac.lan>
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