8000 v1.1.5 by talmo · Pull Request #577 · talmolab/sleap · GitHub
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Merged
merged 20 commits into from
Aug 2, 2021
Merged

v1.1.5 #577

merged 20 commits into from
Aug 2, 2021

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talmo
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@talmo talmo commented Aug 2, 2021

Update main to v1.1.5.

talmo and others added 20 commits March 24, 2021 21:18
- twine v3.4.x and greater seems to have issues with our build system since we have an older version of `importlib_metadata`
The code samples to render properly have to be valid rst literal blocks (https://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html#literal-blocks). The most affected are multi-line code samples that are joined to a singe line, see https://sleap.ai/api/sleap.io.dataset.html.
* Add GPU specification to training CLI
* Update CLI docs
* Set linter version
* Add score metadata to the exported HDF5 analysis files

* Fix and add test for labels.numpy()

* Add some tweaks and docs to video rendering

* Add model describer to sleap-inspect CLI

* Minor logging

* CLI tweak

* Tweak visual indicator of not-visible points

* Color untracked instances consistently

* Track removal utilities
- Add menu option: Tracks -> Delete All Tracks
- Add Labels.remove_all_tracks() method
- Tests

* Try adding token to codecov action

* Pin black formatter version and relint

* Bump minor version

* Update minor version in docs

* Disable verbose coverage uploading
* Fix augmentation with no instances

* Add Labels.copy

* Add empty instance removal methods

* Add empty instance removal in provider constructor

* Fix augmentation test

* Properly ignore empty instances and frames in DLC import

* Fix test

* Lint
* Increase range for number of instances to cull

* Add background box to missing nodes for improved visibility

* Lint

* Fix predicted instance coloring order

* Add node label font size configuration
* Fix video repr when shape data not available

* Merge incompletely matching skeletons into union of nodes

* Add a little extra padding when filling in missing points

* Add automatic call to _fix_array() when accessing or setting nodes

* Ad
8000
d node data merging

* Add test for predicted instance data merge

* Add node merging
- Will update base node with merge node when renaming from GUI

* Lint

* Fix broken tests
* Add labels.split() utility

* Lint
- Add `sleap.load_metrics()`
- Example notebook
- Remove version from some places
- Add open in colab button in model eval notebook
- Update installation doc
- Add a general Help page
- Add some deep links to the CLI sections
@talmo talmo merged commit d31000e into main Aug 2, 2021
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