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tanyaphung.github.io Public
Forked from academicpages/academicpages.github.ioGithub Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
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rnaseq_analysis_scripts Public
This repo contains scripts relating to analysis of RNAseq data
HTML UpdatedMay 7, 2025 -
FUMA_Celltype_cmd Public
This repo hosts codes for running FUMA Cell Type on the command line
R MIT License UpdatedMay 1, 2025 -
scrnaseq_viewer Public
This repository provides an overview of single cell RNAseq data that I have processed
Python MIT License UpdatedApr 7, 2025 -
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rshiny_tutorial Public
This repository contains notes for rshiny
R GNU General Public License v3.0 UpdatedApr 4, 2025 -
poc_pqtls Public
Processing pQTLs for incorporating to FUMA
GNU General Public License v3.0 UpdatedMar 4, 2025 -
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cheat_sheets Public
This repo contains cheat sheets for a variety of programs I use frequently
MIT License UpdatedJan 8, 2024 -
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neoantigens_prioritization Public
Prioritize neoantigens based on MHC binding affinity, MHC stability, and tumor abundance
XSLT GNU General Public License v3.0 UpdatedDec 22, 2020 -
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vcfhelper Public
This repository contains scripts relating to analyzing vcf files
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EffectsOfRemapping Public
This repo reports the analysis comparing TPM and ASEReadCounter counts for between results from GTEX version 8 and results from remapping to sex-specific reference
UpdatedMay 14, 2020 -
popgen_tools Public
This repository contains scripts that are often used in population genetics analyses (generating the site frequency spectrum or calculating genetic diversity)
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Neoepitope_Prediction Public
Forked from WilsonSayresLab/Neoepitope_PredictionPython UpdatedJun 5, 2019 -
process_RNAseq Public
This repo documents what I am learning about how to process RNAseq data
UpdatedMay 29, 2019 -
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popgen_scripts Public
Useful programs and scripts in bioinformatics and population genetics
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Genetic_Architecture Public
This repository contains scripts associated with the manuscript titled "Inferring the genetic architecture and extent of negative selection of human complex traits" (in prep)
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NGS_pipeline Public
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
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