Stars
Gillespie’s Stochastic Simulation Algorithm for Impatient People ⌛
Models to infer helminth worm burden at the community level
Handover code for BDI Summer Studentship 2021. Contains code attepmting to adapt Dr Tom Crellen's difference-equation waning COVID-19 immunity transmission-dynamic model to the pomp framework with …
Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"
A forward time simulation of malaria transmission and evolution
Scenario analyses for COVID-19 outbreak in the United Kingdom
Agent based models to simulate the acquisition of bacterial organisms in a hospital ward
Scripts to allow replication of the analysis from "Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country"
Short Read Sequence Typing for Bacterial Pathogens