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xgrep Public
Grid grep - search rectangular 'gridded' files, such as Excel, TSV, and CSV.
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dark-matter Public
Forked from acorg/dark-matterVirus discovery
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summarize-ranges Public
Summarize contiguous numeric (integer) ranges found on standard input
Python UpdatedMay 11, 2025 -
ete Public
Forked from etetoolkit/etePython package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …
Python GNU General Public License v3.0 UpdatedMay 6, 2025 -
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slurm-pipeline-feedstock Public
Forked from conda-forge/slurm-pipeline-feedstockA conda-smithy repository for slurm-pipeline.
BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2024 -
trie Public
Some old code from 1990 that was used in an xterm replacement written at PCS Gmbh in Munich
C UpdatedOct 16, 2024 -
DendroPy Public
Forked from jeetsukumaran/DendroPyA Python library for phylogenetic scripting, simulation, data processing and manipulation.
Python Other UpdatedSep 5, 2024 -
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OpenRDP Public
Forked from raspberryhusky/OpenRDPAn open-source re-implementation of the RDP4 recombination detection program
Python GNU General Public License v3.0 UpdatedJul 27, 2024 -
best Public
Forked from treszkai/bestBayesian estimation supersedes the t-test
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pegwords Public
Utils for making mnemonic pegword-like word sequences from digit sequences
Python UpdatedAug 20, 2023 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
Python MIT License UpdatedAug 18, 2023 -
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biopython Public
Forked from biopython/biopythonOfficial git repository for Biopython (converted from CVS)
Python Other UpdatedApr 7, 2023 -
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pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedMar 23, 2022 -
PRJNA692319_public Public
Forked from jbloom/PRJNA692319_publicAnalysis of Antarctica sequencing samples contaminated with SARS-CoV-2
Python UpdatedFeb 11, 2022 -
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ggboxplot-random-seed-demo Public
A Shiny app showing how ggboxplot resets the RNG to a constant value each time it is used
R UpdatedNov 19, 2021 -
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 28, 2021 -
CuratedGenBank Public
Forked from DrTrevorBell/CuratedGenBankCurated Hepatitis B Virus Alignments from GenBank Data
Python GNU General Public License v2.0 UpdatedOct 6, 2021 -
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simanneal Public
Forked from perrygeo/simannealPython module for Simulated Annealing optimization
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augur Public
Forked from nextstrain/augurPipeline components for real-time phylodynamic analysis
Python GNU Affero General Public License v3.0 UpdatedMay 23, 2020
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